Start it multiple times on different set of files? Just use different wildcards for each invocation (or use different folders, or ...). With a bit of additional things you can make that line also do the mp3 decoding etc.
I started multiple ones, i am trying to figure out the mp3 decoding part so i don't have code them over to wav first that wast a lot of time. I am thinking about using ffmpeg.
EDIT: how would i have it go straight to encoding to opus from the mp3 to wav decode? or can i?
i have this right now but i don't know bash really well so it doesn't work but hopefully you know what i am trying to get done by reading it.
for m in *.mp3;do ffmpeg -i "$m" "$w"; opusenc --vbr --bitrate 15 "$w" "$(basename "$m")".opus;#rm -v *.mp3; done